PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495065
Common NameARALYDRAFT_495065
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 215aa    MW: 23628.4 Da    PI: 6.8072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495065genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-2176126256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
             +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  495065  76 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDEAALRFRGN 126
             7********.**********7.....338*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1476125IPR001471AP2/ERF domain
PROSITE profilePS5103225.69976133IPR001471AP2/ERF domain
SMARTSM003802.7E-3676139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3376134IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2376134IPR016177DNA-binding domain
PRINTSPR003673.9E-127788IPR001471AP2/ERF domain
CDDcd000181.26E-1484135No hitNo description
PRINTSPR003673.9E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSAMVSALTQ VVSARSQTEA EGAHSSSSSA GQKRGWLGID SVPIPSPFAR VDSSLSPIEE  60
STSKALPEEA REKRRRYRGV RQRPWGKWAA EIRDPHRAAR VWLGTFDTAE AAARAYDEAA  120
LRFRGNKAKL NFPEDVRILP PPPPLLPPPA DTAANKAEED LINYWSYSKL LQSSDQRLIP  180
ERGQEESTNI LEHLPMEQPL PPSSSGPSSS DFCGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2373136266ATERF1
3gcc_A4e-2373136266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176EKRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5803780.0AJ580378.1 Arabidopsis thaliana mRNA for putative AP2 domain transcription factor, clone At5g5008-like.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864033.11e-155DNA binding protein, partial
SwissprotQ70II31e-102EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLD7MPI51e-155D7MPI5_ARALL; DNA binding protein (Fragment)
STRINGfgenesh2_kg.8__881__AT5G50080.11e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-94ethylene response factor 110